 # Samrat Man Singh

Email: mail@samrat.me

Hi! I’m Samrat, a programmer from Nepal.

# Myers' diff algorithm in Clojure

### 2019-10-21

If you’re a programmer, you’re probably fairly comfortable with understanding and interpreting diff patches of the kind that git and other version control systems use. In this post we’ll walk through a Clojure implementation of the Myers’ diff algorithm, which is the algorithm used by Git. I have been implementing Git following along James Coglan’s book “Building Git”– you can check out the project here. The project itself is in Rust but I thought it might be an interesting exercise to implement the algorithm in Clojure.

## Edit graph Say we want to turn a file with the lines A,B,C into A,C,E. The Myers’ diff algorithm finds out the shortest edit script that does so. The algorithm works on an edit graph as shown above– a rightward traversal from one vertex to another indicates deletion of a line from the old file; a downward traversal indicates insertion of a line from the new file.

Also notice that in our example ABC -> ACE there are two lines which are the same(A & C). Myers’ algorithm leverages this to produce the shortest edit script. In our edit graph above, you can see that where lines are equal we have drawn dotted lines to indicate diagonal traversals which require neither insertion nor deletion. The Myers’ algorithm maximizes the number of diagonal traversals in the edit script it produces1.

Let’s walk through the output Myers’ algorithm produces for our example above: The first character is the same in both files so take the first diagonal down. Then delete B. The third character in the old file(C) is the same as the second in the new file so keep it and do a diagonal traversal again. Then insert E. This series of edits on the old file has produced our desired new file, and so we stop.

Finally, before we dive into the algorithm, we have one more addition to the edit graph. We will draw downward-diagonals across the graph, also called k-lines. Each k-line has the equation k = x - y.

## Implementation

The maximum number of operations(insertions or deletions) the edit script can have is len(old) + len(new)– in this case we would be deleting every line in the old file and inserting every line from the new file.

We iterate through 0 to maximum number of operations and see what the farthest point along each k-line we can go. In the reduce, we can see that our accumulator is a tuple with v and trace.

v maps each k to the farthest x we have found so far along that k-line. We can discard the y values since we can easily compute them(y = x - k).

trace is a vector of the vs we’ve seen so far.

We can see that the function ultimately returns trace. This will be used to reconstruct the path that we took along the graph.

(defn shortest-edit [a b]
(let [max (+ (count a) (count b))
[_ trace] (reduce (fn [[v trace] d]
(let [[found-end? farthest-xs] (get-farthest-xs-for-d v a b d)
[new-v new-trace] [(merge v farthest-xs)
(conj trace v)]]
(if found-end?
(reduced [new-v new-trace])
[new-v new-trace])))
[{1 0} []]
(range 0 (inc max)))]
trace))

To get to a line k, we can either go down from k+1 or go right from line k-1. We use the move-down? function to decide whether to move down or right:

(defn move-down?
[v d k]
(or (= k (- d))
(and (not= k d)
(< (get v (dec k))
(get v (inc k))))))
• If k=-d, it is not possible to go right from k-1, so go down from k+1.

• If k=d, it is not possible to go down from k+1, so go right from k-1.

• Otherwise, go down if v[k-1] < v[k+1].

What this expression in the predicate is saying is: if we are further along on the k+1 line, we want to go down to meet the k line. Else go right from the k-1 line.

Next, in get-farthest-xy-along-k* we figure out what the farthest (x,y) we can reach in this round d along the k line given the v map we’ve built so far. a and b contain the lines that we want to diff. This simply uses move-down?as described above; then if possible walks down any diagonals.

(defn get-farthest-xy-along-k*
[v d a b k]
(let [x (if (move-down? v d k)
(get v (inc k))
(inc (get v (dec k))))
y (- x k)
;; walk down diagonals
[x y] (loop [[x y] [x y]]
(if (and (< x (count a))
(< y (count b))
(= (get a x) (get b y)))
(recur [(inc x) (inc y)])
[x y]))]
[x y]))

get-farthest-xs-for-d iterates from -d to d(both inclusive), 2 steps at a time2 and stores the farthest x for each k, returning early if we reach the bottom-right corner in our edit graph.

(defn get-farthest-xs-for-d
[v a b d]
(let [get-farthest-xy-along-k (partial get-farthest-xy-along-k* v d a b)]
(reduce (fn [[found-end? k->x] k]
(let [[x y] (get-farthest-xy-along-k k)]
(if (and (>= x (count a))
(>= y (count b)))
(reduced [true k->x])
[found-end? (assoc k->x k x)])))
[false {}]
(range (- d) (inc d) 2))))

So far, we’ve built up functions that give us a trace:

myers.core> (shortest-edit (clojure.string/split "ABCABBA" #"")
(clojure.string/split "CBABAC" #""))
[{1 0}
{1 0, 0 0}
{1 1, 0 0, -1 0}
{1 1, 0 2, -1 0, -2 2, 2 3}
{1 5, 0 2, -1 4, -2 2, 2 3, -3 3, 3 5}
{1 5, 0 5, -1 4, -2 4, 2 7, -3 3, 3 5, -4 3, 4 7}]
myers.core> 

Now, let’s look at how to turn this into a diff.

## Backtracking and producing the diff

This next function will take an input a trace and output an edit sequence. Each element in the edit-sequence is of the form [prev-x prev-y x y].

This time we start from the bottom-right node of the edit graph. In each iteration, we figure out the previous (x,y)– also walking back up diagonals if required.

(defn trace->edit-seq
[n m trace]
(let [[_ edit-seq]
(reduce (fn [[[x y] edit-seq] [d v]]
(let [k (- x y)
prev-k (if (move-down? v d k)
(inc k)
(dec k))
prev-x (get v prev-k)
prev-y (- prev-x prev-k)
[[x y] edit-seq] (loop [[x y] [x y]
edit-seq edit-seq]
(if (and (> x prev-x) (> y prev-y))
(recur [(dec x) (dec y)]
(conj edit-seq
[(dec x) (dec y) x y]))
[[x y] edit-seq]))
edit-seq (if (pos? d)
(conj edit-seq [prev-x prev-y x y])
edit-seq)]
[[prev-x prev-y] edit-seq]))
[[n m] []]
(reverse (map vector (range) trace)))]
(reverse edit-seq)))

Once we have an edit sequence, printing the diff is pretty straightforward:

(defn diff
[a b]
(for [[prev-x prev-y x y] (trace->edit-seq (count a)
(count b)
(shortest-edit a b))]
(let [a-line (get a prev-x)
b-line (get b prev-y)]
(cond
(= x prev-x) {:op :ins
:content b-line}
(= y prev-y) {:op :del
:content a-line}
:else {:op :eql
:content a-line}))))

(defn print-diff
[diff]
(doseq [{:keys [op content]} diff]
(let [d-out (case op
:ins (format "+%s" content)
:del (format "-%s" content)
:eql (format " %s" content))]
(println d-out))))

1. which is also why finding the shortest edit script and finding the longest common subsequence are equivalent problems.

[return]
2. if d is even, you can only reach an even k-line, and vice-versa.

[return]
Tags: clojure  programming